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    Interface MolecularSequenceVariant

    interface MolecularSequenceVariant {
        _cigar?: Element;
        _end?: Element;
        _observedAllele?: Element;
        _referenceAllele?: Element;
        _start?: Element;
        cigar?: string;
        end?: integer;
        extension?: Extension[];
        id?: id;
        modifierExtension?: Extension[];
        observedAllele?: string;
        referenceAllele?: string;
        start?: integer;
        variantPointer?: Reference;
    }
    Index

    Properties

    _cigar? _end? _observedAllele? _referenceAllele? _start? cigar? end? extension? id? modifierExtension? observedAllele? referenceAllele? start? variantPointer?

    Properties

    Optional_cigar

    _cigar?: Element

    Extended CIGAR string for aligning the sequence with reference bases

    Optional_end

    _end?: Element

    End position of the variant on the reference sequence

    Optional_observedAllele

    _observedAllele?: Element

    Allele that was observed

    Optional_referenceAllele

    _referenceAllele?: Element

    Allele in the reference sequence

    Optional_start

    _start?: Element

    Start position of the variant on the reference sequence

    cigar?: string

    Extended CIGAR string for aligning the sequence with reference bases

    end?: integer

    End position of the variant on the reference sequence

    extension?: Extension[]

    Additional content defined by implementations

    id?: id

    Unique id for inter-element referencing

    modifierExtension?: Extension[]

    Extensions that cannot be ignored even if unrecognized

    observedAllele?: string

    Allele that was observed

    referenceAllele?: string

    Allele in the reference sequence

    start?: integer

    Start position of the variant on the reference sequence

    variantPointer?: Reference

    Pointer to observed variant information

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