IGUHealth
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    Interface MolecularSequence

    interface MolecularSequence {
        _coordinateSystem?: Element;
        _implicitRules?: Element;
        _language?: Element;
        _observedSeq?: Element;
        _readCoverage?: Element;
        _type?: Element;
        contained?: ConcreteType[];
        coordinateSystem: integer;
        device?: Reference;
        extension?: Extension[];
        id?: id;
        identifier?: Identifier[];
        implicitRules?: uri;
        language?: code;
        meta?: Meta;
        modifierExtension?: Extension[];
        observedSeq?: string;
        patient?: Reference;
        performer?: Reference;
        pointer?: Reference[];
        quality?: MolecularSequenceQuality[];
        quantity?: Quantity;
        readCoverage?: integer;
        referenceSeq?: MolecularSequenceReferenceSeq;
        repository?: MolecularSequenceRepository[];
        resourceType: "MolecularSequence";
        specimen?: Reference;
        structureVariant?: MolecularSequenceStructureVariant[];
        text?: Narrative;
        type?: code;
        variant?: MolecularSequenceVariant[];
    }
    Index

    Properties

    _coordinateSystem? _implicitRules? _language? _observedSeq? _readCoverage? _type? contained? coordinateSystem device? extension? id? identifier? implicitRules? language? meta? modifierExtension? observedSeq? patient? performer? pointer? quality? quantity? readCoverage? referenceSeq? repository? resourceType specimen? structureVariant? text? type? variant?

    Properties

    Optional_coordinateSystem

    _coordinateSystem?: Element

    Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end)

    Optional_implicitRules

    _implicitRules?: Element

    A set of rules under which this content was created

    Optional_language

    _language?: Element

    Language of the resource content

    Optional_observedSeq

    _observedSeq?: Element

    Sequence that was observed

    Optional_readCoverage

    _readCoverage?: Element

    Average number of reads representing a given nucleotide in the reconstructed sequence

    Optional_type

    _type?: Element

    aa | dna | rna

    contained?: ConcreteType[]

    Contained, inline Resources

    coordinateSystem: integer

    Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end)

    device?: Reference

    The method for sequencing

    extension?: Extension[]

    Additional content defined by implementations

    id?: id

    Logical id of this artifact

    identifier?: Identifier[]

    Unique ID for this particular sequence. This is a FHIR-defined id

    implicitRules?: uri

    A set of rules under which this content was created

    language?: code

    Language of the resource content

    meta?: Meta

    Metadata about the resource

    modifierExtension?: Extension[]

    Extensions that cannot be ignored

    observedSeq?: string

    Sequence that was observed

    patient?: Reference

    Who and/or what this is about

    performer?: Reference

    Who should be responsible for test result

    pointer?: Reference[]

    Pointer to next atomic sequence

    quality?: MolecularSequenceQuality[]

    An set of value as quality of sequence

    quantity?: Quantity

    The number of copies of the sequence of interest. (RNASeq)

    readCoverage?: integer

    Average number of reads representing a given nucleotide in the reconstructed sequence

    referenceSeq?: MolecularSequenceReferenceSeq

    A sequence used as reference

    repository?: MolecularSequenceRepository[]

    External repository which contains detailed report related with observedSeq in this resource

    resourceType: "MolecularSequence"
    specimen?: Reference

    Specimen used for sequencing

    structureVariant?: MolecularSequenceStructureVariant[]

    Structural variant

    Optionaltext

    text?: Narrative

    Text summary of the resource, for human interpretation

    type?: code

    aa | dna | rna

    variant?: MolecularSequenceVariant[]

    Variant in sequence

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