Interface MolecularSequenceVariant

interface MolecularSequenceVariant {
    _cigar?: Element;
    _end?: Element;
    _observedAllele?: Element;
    _referenceAllele?: Element;
    _start?: Element;
    cigar?: string;
    end?: integer;
    extension?: Extension[];
    id?: id;
    modifierExtension?: Extension[];
    observedAllele?: string;
    referenceAllele?: string;
    start?: integer;
    variantPointer?: Reference;
}

Properties

_cigar? _end? _observedAllele? _referenceAllele? _start? cigar? end? extension? id? modifierExtension? observedAllele? referenceAllele? start? variantPointer?

Properties

Optional_cigar

_cigar?: Element

Extended CIGAR string for aligning the sequence with reference bases

Optional_end

_end?: Element

End position of the variant on the reference sequence

Optional_observedAllele

_observedAllele?: Element

Allele that was observed

Optional_referenceAllele

_referenceAllele?: Element

Allele in the reference sequence

Optional_start

_start?: Element

Start position of the variant on the reference sequence

Optionalcigar

cigar?: string

Extended CIGAR string for aligning the sequence with reference bases

Optionalend

end?: integer

End position of the variant on the reference sequence

Optionalextension

extension?: Extension[]

Additional content defined by implementations

Optionalid

id?: id

Unique id for inter-element referencing

OptionalmodifierExtension

modifierExtension?: Extension[]

Extensions that cannot be ignored even if unrecognized

OptionalobservedAllele

observedAllele?: string

Allele that was observed

OptionalreferenceAllele

referenceAllele?: string

Allele in the reference sequence

Optionalstart

start?: integer

Start position of the variant on the reference sequence

OptionalvariantPointer

variantPointer?: Reference

Pointer to observed variant information

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