Interface SubstanceNucleicAcidSubunit

interface SubstanceNucleicAcidSubunit {
    _length?: Element;
    _sequence?: Element;
    _subunit?: Element;
    extension?: Extension[];
    fivePrime?: CodeableConcept;
    id?: id;
    length?: integer;
    linkage?: SubstanceNucleicAcidSubunitLinkage[];
    modifierExtension?: Extension[];
    sequence?: string;
    sequenceAttachment?: Attachment;
    subunit?: integer;
    sugar?: SubstanceNucleicAcidSubunitSugar[];
    threePrime?: CodeableConcept;
}

Properties

_length? _sequence? _subunit? extension? fivePrime? id? length? linkage? modifierExtension? sequence? sequenceAttachment? subunit? sugar? threePrime?

Properties

Optional_length

_length?: Element

The length of the sequence shall be captured

Optional_sequence

_sequence?: Element

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured

Optional_subunit

_subunit?: Element

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts

Optionalextension

extension?: Extension[]

Additional content defined by implementations

OptionalfivePrime

fivePrime?: CodeableConcept

The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant

Optionalid

id?: id

Unique id for inter-element referencing

Optionallength

length?: integer

The length of the sequence shall be captured

Optionallinkage

linkage?: SubstanceNucleicAcidSubunitLinkage[]

The linkages between sugar residues will also be captured

OptionalmodifierExtension

modifierExtension?: Extension[]

Extensions that cannot be ignored even if unrecognized

Optionalsequence

sequence?: string

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured

OptionalsequenceAttachment

sequenceAttachment?: Attachment

(TBC)

Optionalsubunit

subunit?: integer

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts

Optionalsugar

sugar?: SubstanceNucleicAcidSubunitSugar[]

5.3.6.8.1 Sugar ID (Mandatory)

OptionalthreePrime

threePrime?: CodeableConcept

The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant

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