Interface MolecularSequence

interface MolecularSequence {
    _coordinateSystem?: Element;
    _implicitRules?: Element;
    _language?: Element;
    _observedSeq?: Element;
    _readCoverage?: Element;
    _type?: Element;
    contained?: ConcreteType[];
    coordinateSystem: integer;
    device?: Reference;
    extension?: Extension[];
    id?: id;
    identifier?: Identifier[];
    implicitRules?: uri;
    language?: code;
    meta?: Meta;
    modifierExtension?: Extension[];
    observedSeq?: string;
    patient?: Reference;
    performer?: Reference;
    pointer?: Reference[];
    quality?: MolecularSequenceQuality[];
    quantity?: Quantity;
    readCoverage?: integer;
    referenceSeq?: MolecularSequenceReferenceSeq;
    repository?: MolecularSequenceRepository[];
    resourceType: "MolecularSequence";
    specimen?: Reference;
    structureVariant?: MolecularSequenceStructureVariant[];
    text?: Narrative;
    type?: code;
    variant?: MolecularSequenceVariant[];
}

Properties

_coordinateSystem? _implicitRules? _language? _observedSeq? _readCoverage? _type? contained? coordinateSystem device? extension? id? identifier? implicitRules? language? meta? modifierExtension? observedSeq? patient? performer? pointer? quality? quantity? readCoverage? referenceSeq? repository? resourceType specimen? structureVariant? text? type? variant?

Properties

Optional_coordinateSystem

_coordinateSystem?: Element

Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end)

Optional_implicitRules

_implicitRules?: Element

A set of rules under which this content was created

Optional_language

_language?: Element

Language of the resource content

Optional_observedSeq

_observedSeq?: Element

Sequence that was observed

Optional_readCoverage

_readCoverage?: Element

Average number of reads representing a given nucleotide in the reconstructed sequence

Optional_type

_type?: Element

aa | dna | rna

Optionalcontained

contained?: ConcreteType[]

Contained, inline Resources

coordinateSystem

coordinateSystem: integer

Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end)

Optionaldevice

device?: Reference

The method for sequencing

Optionalextension

extension?: Extension[]

Additional content defined by implementations

Optionalid

id?: id

Logical id of this artifact

Optionalidentifier

identifier?: Identifier[]

Unique ID for this particular sequence. This is a FHIR-defined id

OptionalimplicitRules

implicitRules?: uri

A set of rules under which this content was created

Optionallanguage

language?: code

Language of the resource content

Optionalmeta

meta?: Meta

Metadata about the resource

OptionalmodifierExtension

modifierExtension?: Extension[]

Extensions that cannot be ignored

OptionalobservedSeq

observedSeq?: string

Sequence that was observed

Optionalpatient

patient?: Reference

Who and/or what this is about

Optionalperformer

performer?: Reference

Who should be responsible for test result

Optionalpointer

pointer?: Reference[]

Pointer to next atomic sequence

Optionalquality

quality?: MolecularSequenceQuality[]

An set of value as quality of sequence

Optionalquantity

quantity?: Quantity

The number of copies of the sequence of interest. (RNASeq)

OptionalreadCoverage

readCoverage?: integer

Average number of reads representing a given nucleotide in the reconstructed sequence

OptionalreferenceSeq

referenceSeq?: MolecularSequenceReferenceSeq

A sequence used as reference

Optionalrepository

repository?: MolecularSequenceRepository[]

External repository which contains detailed report related with observedSeq in this resource

resourceType

resourceType

Optionalspecimen

specimen?: Reference

Specimen used for sequencing

OptionalstructureVariant

structureVariant?: MolecularSequenceStructureVariant[]

Structural variant

Optionaltext

text?: Narrative

Text summary of the resource, for human interpretation

Optionaltype

type?: code

aa | dna | rna

Optionalvariant

variant?: MolecularSequenceVariant[]

Variant in sequence

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